- Rnall (a standalone program for RNA local secondary structure prediction and rho-independent terminator prediction)
- Rnall Viewer (a standalone program for Rnall secondary structural analysis and visualization)
- CodonO (a webserver run and/or standalone program for synonymous codon usage bias analyses within and across genomes)
- AntigenMap (a webserver run and/or standalone program for antigenic cartography construction)
- IPMiner (a webserver for identifying potential progenitor gene(s) for influenza A virus)
- AntigenMap 3D ( a web application for generating 3D antigenic maps )
