Journal Publications


    2018

  1. Wen, F., S. Blackmon, A. K. Olivier, L. Li, G. Guan, H. Sun, and P. Wang, and X.-F. Wan. 2018. Mutation W222L at the receptor binding site of hemagglutinin could facilitate viral adaption from equine influenza A(H3N8) virus to dogs. Journal of virology, in press.
  2. Li, L., A. S. Bowman, T. J. DeLiberto, M. L. Killian, S. Krauss, J. M. Nolting, M. K. Torchetti, A. M. Ramey, A. B. Reeves, D. E. Stallknecht, R. J. Webby, X.-F. Wan. 2018. Genetic evidence supports sporadic and independent introductions of low pathogenic H5 avian influenza A viruses from wild birds to domestic poultry in North America. Journal of virology, in press.
  3. Han, L., L. Li, F. Wen, L. Zhong, T. Zhang, and X.-F. Wan. 2018. Graph-Guided multi-task sparse learning model: a method for identifying antigenic variants of influenza A(H3N2) virus. Bioinformatics, doi: 10.1093/bioinformatics/bty457.
  4. Wen, Feng and Li, Lei and Zhao, Nan and Chiang, Meng-Jung and Xie, Hang and Cooley, Jim and Webby, Richard and Wang, Peng George and Wan, Xiu-Feng. 2018. A Y161F Hemagglutinin Substitution Increases Thermostability and Improves Yields of 2009 H1N1 Influenza A Virus in Cells. Journal of virology, 92(2): e01621--17.
  5. Kosikova, Martina and Li, Lei and Radvak, Peter and Ye, Zhiping and Wan, Xiu-Feng and Xie, Hang. 2018. Imprinting of Repeated Influenza A/H3 Exposures on Antibody Quantity and Antibody Quality: Implications on Seasonal Vaccine Strain Selection and Vaccine Performance. Clinical Infectious Diseases, ciy327, https://doi.org/10.1093/cid/ciy327.
  6. Ferguson, Lucas and Luo, Kaijian and Olivier, Alicia K and Cunningham, Fred L and Blackmon, Sherry and Hanson-Dorr, Katie and Sun, Hailiang and Baroch, John and Lutman, Mark W and Quade, Bianca and Epperson, William and Webby, Richard and DeLiberto, Thomas J and Wan, Xiu-Feng. 2018. Influenza D Virus Infection in Feral Swine Populations, United States.. Emerging infectious diseases, 24(6): 1020--1028.

  7. 2017

  8. Luo, Junrong and Ferguson, Lucas and Smith, David R and Woolums, Amelia R and Epperson, William B and Wan, Xiu-Feng. 2017. Serological evidence for high prevalence of Influenza D viruses in cattle, Nebraska, United States, 2003--2004. Virology, 501: 88--91.
  9. Martin, Brigitte E and Bowman, Andrew S and Li, Lei and Nolting, Jacqueline M and Smith, David R and Hanson, Larry A and Wan, Xiu-Feng. 2017. Detection of antigenic variants of subtype H3 swine influenza A viruses from clinical samples. Journal of clinical microbiology, 55(4): 1037--1045.
  10. Wang, Chengmin and Liu, Huimin and Luo, Jing and Chen, Lin and Li, Meng and Su, Wen and Zhao, Na and Liu, Shelan and Xie, Li and Jia, Yaxiong and Ding, Hua and Wan, Xiufeng and He, Hongxuan. 2017. HA triggers the switch from MEK1 SUMOylation to phosphorylation of the ERK pathway in influenza A virus-infected cells and facilitates its infection. Frontiers in cellular and infection microbiology, 7: 27.
  11. Xu, Yifei and Ramey, Andrew M and Bowman, Andrew S and DeLiberto, Thomas J and Killian, Mary L and Krauss, Scott and Nolting, Jacqueline M and Torchetti, Mia Kim and Reeves, Andrew B and Webby, Richard J and Stallknecht, David E and Wan, Xiu-Feng. 2017. Low-pathogenic influenza A viruses in North American diving ducks contribute to the emergence of a novel highly pathogenic influenza A (H7N8) virus. Journal of Virology, 91(9): e02208--16.
  12. Xie, Hang and Li, Lei and Ye, Zhiping and Li, Xing and Plant, Ewan P and Zoueva, Olga and Zhao, Yangqing and Jing, Xianghong and Lin, Zhengshi and Kawano, Toshiaki and Chiang, Meng-Jung and Finch, Courtney L and Kosikova, Martina and Zhang, Anding and Zhu, Yanhong and Wan, Xiu-Feng. 2017. Differential effects of prior influenza exposures on H3N2 cross-reactivity of human postvaccination sera. Clinical Infectious Diseases, 65(2): 259--267.
  13. Sun, Hailiang and Kaplan, Bryan S and Guan, Minhui and Zhang, Guihong and Ye, Jianqiang and Long, Li-Ping and Blackmon, Sherry and Yang, Chun-Kai and Chiang, Meng-Jung and Xie, Hang and Zhao, Nan and Cooley, Jim and Smith, David F and Liao, Ming and Cardona, Carol and Li, Lei and Wang, George Peng and Webby, Richard and Wan, Xiu-Feng. 2017. Pathogenicity and transmission of a swine influenza A (H6N6) virus. Emerging microbes & infections, 6(4): e17.
  14. Martin, Brigitte E and Sun, Hailiang and Carrel, Margaret and Cunningham, Fred L and Baroch, John A and Hanson-Dorr, Katie C and Young, Sean G and Schmit, Brandon and Nolting, Jacqueline M and Yoon, Kyoung-Jin and Lutman, Mark W and Pedersen, Kerri and Lager, Kelly and Bowman, Andrew S and Slemons, Richard D and Smith, David R and DeLiberto, Thomas and Wan, Xiu-Feng. 2017. Feral Swine in the United States Have Been Exposed to both Avian and Swine Influenza A Viruses. Applied and environmental microbiology, 83(19): e01346--17.
  15. Sun, Hailiang and Blackmon, Sherry and Yang, Guohua and Waters, Kaitlyn and Li, Tao and Tangwangvivat, Ratanaporn and Xu, Yifei and Shyu, Daniel and Wen, Feng and Cooley, Jim and Senter, Lucy and Lin, Xiaoxu and Jarman, Richard and Hanson, Larry and Webby, Richard and Wan, Xiu-Feng. 2017. Zoonotic Risk, Pathogenesis, and Transmission of Avian-Origin H3N2 Canine Influenza Virus. Journal of virology, 91(21): e00637--17.
  16. Wu, Zhigang and Liu, Yunpeng and Li, Lei and Wan, Xiu-Feng and Zhu, He and Guo, Yuxi and Wei, Mohui and Guan, Wanyi and Wang, Peng George. 2017. Decoding glycan protein interactions by a new class of asymmetric N-glycans. Organic & biomolecular chemistry, 15(42): 8946--8951.
  17. Krishnavajhala, Aparna and Muire, Preeti J and Hanson, Larry and Wan, Henry and McCarthy, Fiona and Zhou, Alan and Petrie-Hanson, Lora. 2017. Transcriptome Changes Associated with Protective Immunity in T and B Cell-Deficient Rag1-/-Mutant Zebrafish. International Journal of Immunology, 5(2): 20--36.

  18. 2016

  19. Xu, Yifei and Bailey, Elizabeth and Spackman, Erica and Li, Tao and Wang, Hui and Long, Li-Ping and Baroch, John A and Cunningham, Fred L and Lin, Xiaoxu and Jarman, Richard G and DeLiberto, Thomas J and Wan, Xiu-Feng. 2016. Limited antigenic diversity in contemporary H7 avian-origin influenza A viruses from North America. Scientific reports, 6: 20688.
  20. Bailey, Elizabeth and Long, Li-Ping and Zhao, Nan and Hall, Jeffrey S and Baroch, John A and Nolting, Jacqueline and Senter, Lucy and Cunningham, Frederick L and Pharr, G Todd and Hanson, Larry and Slemons, Richard and DeLiberto, Thomas J and Wan, Xiu-Feng. 2016. Antigenic characterization of H3 subtypes of avian influenza A viruses from North America. Avian diseases, 60(1): 346--353.
  21. Ferguson, Lucas and Olivier, Alicia K and Genova, Suzanne and Epperson, William B and Smith, David R and Schneider, Liesel and Barton, Kathleen and McCuan, Katlin and Webby, Richard J and Wan, Xiu-Feng. 2016. Pathogenesis of influenza D virus in cattle. Journal of virology, 90(12): 5636--5642.
  22. Sun, Hailiang and Xue, Jian-Li and Bailey, Elizabeth and Xu, Yifei and Hu, Guoliang and Baroch, John and Zhang, Yi and Pace, Lanny and DeLiberto, Thomas J and Wan, Xiu-Feng. 2016. A quantitative RT-PCR assay for rapid detection of Eurasian-lineage H10 subtype influenza A virus. Virologica Sinica, 31(5): 444.

  23. 2015

  24. Xu, Yifei and Cao, Huabin and Liu, Hongyan and Sun, Hailiang and Martin, Brigitte and Zhao, Yulong and Wang, Qi and Deng, Guangfu and Xue, Jianli and Zong, Yibo and Zhu, Jing and Wen, Feng and Long, Li-Pong and Wong, Sook-San and Zhao, Nan and Fu, Xiaoshan and Liao, Ming and Hu, Guoliang and Wan, Xiu-Feng. 2015. Identification of the source of A (H10N8) virus causing human infection. Infection, Genetics and Evolution, 30: 159--163.
  25. Xie, Hang and Wan, Xiu-Feng and Ye, Zhiping and Plant, Ewan P and Zhao, Yangqing and Xu, Yifei and Li, Xing and Finch, Courtney and Zhao, Nan and Kawano, Toshiaki and Zoueva, Olga and Chiang, Meng-Jung and Jing, Xianghong and Lin, Zhengshi and Zhang, Anding and Zhu, Yanhong. 2015. H3N2 mismatch of 2014--15 northern hemisphere influenza vaccines and head-to-head comparison between human and ferret antisera derived antigenic maps. Scientific reports, 5(0): 15279.
  26. Ferguson, Lucas and Eckard, Laura and Epperson, William B and Long, Li-Ping and Smith, David and Huston, Carla and Genova, Suzanne and Webby, Richard and Wan, Xiu-Feng. 2015. Influenza D virus infection in Mississippi beef cattle. Virology, 486(0): 28--34.
  27. Zhao, Nan and Martin, Brigitte E and Yang, Chun-Kai and Luo, Feng and Wan, Xiu-Feng. 2015. Association analyses of large-scale glycan microarray data reveal novel host-specific substructures in influenza A virus binding glycans. Scientific reports, 5(0): 15778.
  28. Collier, SD and Branton, SL and Evans, JD and Leigh, SA and Wan, XF and Cooksey, AM and Olanrewaju, HA and Pharr, GT. 2015. Proteomic Analysis of Mycoplasma gallisepticum Vaccine Strain F. International Journal of Poultry Science, 14(1): 1.
  29. Ye, Jianqiang and Wen, Feng and Xu, Yifei and Zhao, Nan and Long, Liping and Sun, Hailiang and Yang, Jialiang and Cooley, Jim and Pharr, G Todd and Webby, Richard and Wan, Xiu-Feng. 2015. Error-prone pcr-based mutagenesis strategy for rapidly generating high-yield influenza vaccine candidates. Virology, 482(0): 234--243.
  30. Martin, Brigitte E and Jia, Kun and Sun, Hailiang and Ye, Jianqiang and Hall, Crystal and Ware, Daphne and Wan, Xiu-Feng. 2015. Detection of influenza antigenic variants directly from clinical samples using polyclonal antibody based proximity ligation assays. Virology, 476(0): 151--158.
  31. Kumar, S and Driskell, EA and Cooley, AJ and Jia, K and Blackmon, S and Wan, X-F and Uhl, EW and Saliki, JT and Sanchez, S and Krimer, PM and Hogan, RJ. 2015. Fatal canid herpesvirus 1 respiratory infections in 4 clinically healthy adult dogs. Veterinary pathology, 52(4): 681--687.
  32. Su, Wen and Wang, Chengmin and Luo, Jing and Zhao, Yuliang and Wu, Yan and Chen, Lin and Zhao, Na and Li, Meng and Xing, Chao and Liu, Huimin and Zhang, Hong and Chang, Yung-fu and Li, Tianxian and Ding, Hua and Wan, Xiufeng and He, Hongxuan. 2015. Testing the effect of internal genes derived from a wild-bird-origin H9N2 influenza A virus on the pathogenicity of an A/H7N9 virus. Cell reports, 12(11): 1831--1841.
  33. Sun, Hailiang and Cunningham, Fred L and Harris, Jillian and Xu, Yifei and Long, Li-Ping and Hanson-Dorr, Katie and Baroch, John A and Fioranelli, Paul and Lutman, Mark W and Li, Tao and Pedersen, Kerri and Schmit, Brandon S and Cooley, Jim and Lin, Xiaoxu and Jarman, Richard G and DeLiberto, Thomas J and Wan, Xiu-Feng. 2015. Dynamics of virus shedding and antibody responses in influenza A virus-infected feral swine. Journal of General Virology, 96(9): 2569--2578.
  34. Li, Yin and Huang, Xin-Mei and Zhao, Dong-Min and Liu, Yu-Zhuo and He, Kong-Wang and Liu, Yao-Xing and Chen, Chang-Hai and Long, Li-Ping and Xu, Yifei and Xie, Xing-Xing and Han, Kai-Kai and Liu, Xiao-Yan and Yang, Jing and Zhang, You-Fa and Fan, Feng and Webby, Richard and Wan, Xiu-Feng. 2015. Detection of Avian H7N9 Influenza A Viruses in the Yangtze Delta Region of China During Early H7N9 Outbreaks. Avian diseases, 60(1): 118--125.

  35. 2014

  36. Feng, Zhixin and Baroch, John A and Long, Li-Ping and Xu, Yifei and Cunningham, Frederick L and Pedersen, Kerri and Lutman, Mark W and Schmit, Brandon S and Bowman, Andrew S and DeLiberto, Thomas J and Wan, Xiu-Feng. 2014. Influenza A subtype H3 viruses in feral swine, United States, 2011--2012. Emerging infectious diseases, 20(5): 843.
  37. Yang, Jialiang and Grnewald, Stefan and Xu, Yifei and Wan, Xiu-Feng. 2014. Quartet-based methods to reconstruct phylogenetic networks. BMC systems biology, 8(1): 21.
  38. Beato, Maria Serena and Xu, Yifei and Long, Li-Ping and Capua, Ilaria and Wan, Xiu-Feng. 2014. Antigenic and genetic evolution of low-pathogenicity avian influenza viruses of subtype H7N3 following heterologous vaccination. Clinical and Vaccine Immunology, 21(5): 603--612.
  39. Spackman, Erica and Wan, Xiu-Feng and Kapczynski, Darrell and Xu, Yifei and Pantin-Jackwood, Mary and Suarez, David L and Swayne, David. 2014. Potency, efficacy, and antigenic mapping of H7 avian influenza virus vaccines against the 2012 H7N3 highly pathogenic avian influenza virus from Mexico. Avian diseases, 58(3): 359--366.
  40. Spackman, Erica and Swayne, David E and Pantin-Jackwood, Mary J and Wan, Xiu-Feng and Torchetti, Mia K and Hassan, Mohammad and Suarez, David L and S e Silva, Mariana. 2014. Variation in protection of four divergent avian influenza virus vaccine seed strains against eight clade 2.2. 1 and 2.2. 1.1. Egyptian H5N1 high pathogenicity variants in poultry. Influenza and other respiratory viruses, 8(6): 654--662.
  41. Yang, Jialiang and Zhang, Tong and Wan, Xiu-Feng. 2014. Sequence-based antigenic change prediction by a sparse learning method incorporating co-evolutionary information. PloS one, 9(9): e106660.
  42. Feng, Zhi-Xin and Bai, Yun and Yao, Jing-Ting and Pharr, G Todd and Wan, Xiu-Feng and Xiao, Shao-Bo and Chi, Ling-Zhi and Gan, Yuan and Wang, Hai-Yan and Wei, Yan-Na and Liu, Mao-Jun and Xiong, Qi-Yan and Bai, Fang-Fang and Li, Bin and Wu, Xu-Su and Shao, Guo-Qing. 2014. Use of serological and mucosal immune responses to Mycoplasma hyopneumoniae antigens P97R1, P46 and P36 in the diagnosis of infection. The Veterinary Journal, 202(1): 128--133.

  43. 2013

  44. Wan, Hongquan and Gao, Jin and Xu, Kemin and Chen, Hongjun and Couzens, Laura K and Rivers, Katie H and Easterbrook, Judy D and Yang, Kevin and Zhong, Lei and Rajabi, Mohsen and Ye, Jianqiang and Sultana, Ishrat and Wan, Xiu-Feng and Liu, Xiufan and Perez, Daniel R and Taubenberger, Jeffery K and Eichelberger, Maryna C. 2013. Molecular basis for broad neuraminidase immunity: conserved epitopes in seasonal and pandemic H1N1 as well as H5N1 influenza viruses. Journal of virology, 87(16): 9290--9300.
  45. Beato, Maria Serena and Mancin, Marzia and Yang, Jialiang and Buratin, Alessandra and Ruffa, Marco and Maniero, Silvia and Fusaro, Alice and Terregino, Calogero and Wan, Xiu-Feng and Capua, Ilaria. 2013. Antigenic characterization of recent H5N1 highly pathogenic avian influenza viruses circulating in Egyptian poultry. Virology, 435(2): 350--356.
  46. Yang, Guohua and Li, Shoujun and Blackmon, Sherry and Ye, Jianqiang and Bradley, Konrad C and Cooley, Jim and Smith, Dave and Hanson, Larry and Cardona, Carol and Steinhauer, David A and Webby, Richard and Liao, Ming and Wan, Xiu-Feng. 2013. Mutation tryptophan to leucine at position 222 of haemagglutinin could facilitate H3N2 influenza A virus infection in dogs. Journal of General Virology, 94(12): 2599--2608.
  47. Feng, Zhixin and Gomez, Janet and Bowman, Andrew S and Ye, Jianqiang and Long, Li-Ping and Nelson, Sarah W and Yang, Jialiang and Martin, Brigitte and Jia, Kun and Nolting, Jacqueline M and Cunningham, Fred and Cardona, Carol and Zhang, Jianqiang and Yoon, Kyoung-Jin and Slemons, Richard D and Wan, Xiu-Feng. 2013. Antigenic characterization of H3N2 influenza A viruses from Ohio agricultural fairs. Journal of virology, (0): JVI--00804.
  48. Sun, Hailiang and Yang, Jialiang and Zhang, Tong and Long, Li-Ping and Jia, Kun and Yang, Guohua and Webby, Richard J and Wan, Xiu-Feng. 2013. Using sequence data to infer the antigenicity of influenza virus. MBio, 4(4): e00230--13.
  49. Mummert, Anna and Weiss, Howard and Long, Li-Ping and Amig M and Wan, Xiu-Feng. 2013. A perspective on multiple waves of influenza pandemics. PloS one, 8(4): e60343.
  50. Wan, Xiu-Feng and Barnett, J Lamar and Cunningham, Fred and Chen, Si and Yang, Guohua and Nash, Shannon and Long, Li-Ping and Ford, Lorelei and Blackmon, Sherry and Zhang, Yan and Hanson, Larry and He, Qiang. 2013. Detection of African swine fever virus-like sequences in ponds in the Mississippi Delta through metagenomic sequencing. Virus genes, 46(3): 441--446.
  51. Ye, Jianqiang and Xu, Yifei and Harris, Jillian and Sun, Hailiang and Bowman, Andrew S and Cunningham, Fred and Cardona, Carol and Yoon, Kyoungjin J and Slemons, Richard D and Wan, Xiu-Feng. 2013. Mutation from arginine to lysine at the position 189 of hemagglutinin contributes to the antigenic drift in H3N2 swine influenza viruses. Virology, 446(1): 225--229.
  52. Wan, Xiu-Feng and Carrel, Margaret and Long, Li-Ping and Alker, Alisa P and Emch, Mike. 2013. Perspective on emergence and re-emergence of amantadine resistant influenza A viruses in domestic animals in China. Infection, Genetics and Evolution, 20(0): 298--303.
  53. Yang, Jialiang and Grnewald, Stefan and Wan, Xiu-Feng. 2013. Quartet-net: a quartet-based method to reconstruct phylogenetic networks. Molecular biology and evolution, 30(5): 1206--1217.
  54. Feng, Zhi-Xin and Wei, Yan-Na and Li, Gui-Lan and Lu, Xiao-Ming and Wan, Xiu-Feng and Pharr, G Todd and Wang, Zhan-Wei and Kong, Meng and Gan, Yuan and Bai, Fang-Fang and Liu, Mao-Jun and Xiong, Qi-Yan and Wu, Xu-Su and Shao, Guo-Qing. 2013. Development and validation of an attenuated Mycoplasma hyopneumoniae aerosol vaccine. Veterinary microbiology, 167(3): 417--424.
  55. Warren, Samantha and Wan, Xiu-Feng and Conant, Gavin and Korkin, Dmitry. 2013. Extreme evolutionary conservation of functionally important regions in H1N1 influenza proteome. PloS one, 8(11): e81027.
  56. Yuan, Xiao-Tong and Zhang, Tong and Wan, Xiu-Feng. 2013. A joint matrix completion and filtering model for influenza serological data integration. PloS one, 8(7): e69842.

  57. 2012

  58. Zhou, Fan and Wang, Guiqin and Buchy, Philippe and Cai, Zhipeng and Chen, Honglin and Chen, Zhiwei and Cheng, Genhong and Wan, Xiu-Feng and Deubel, Vincent and Zhou, Paul. 2012. A triclade DNA vaccine designed on the basis of a comprehensive serologic study elicits neutralizing antibody responses against all clades and subclades of highly pathogenic avian influenza H5N1 viruses. Journal of virology, 86(12): 6970--6978.
  59. Cai, Zhipeng and Ducatez, Mariette F and Yang, Jialiang and Zhang, Tong and Long, Li-Ping and Boon, Adrianus C and Webby, Richard J and Wan, Xiu-Feng. 2012. Identifying antigenicity-associated sites in highly pathogenic H5N1 influenza virus hemagglutinin by using sparse learning. Journal of molecular biology, 422(1): 145--155.
  60. Barnett, J Lamar and Yang, Jialiang and Cai, Zhipeng and Zhang, Tong and Wan, Xiu-Feng. 2012. AntigenMap 3D: an online antigenic cartography resource. Bioinformatics, 28(9): 1292--1293.
  61. Carrel, Margaret A and Emch, Michael and Nguyen, Tung and Jobe, R Todd and Wan, Xiu-Feng. 2012. Population-environment drivers of H5N1 avian influenza molecular change in Vietnam. Health & place, 18(5): 1122--1131.
  62. Cai, Zhipeng and Zhang, Tong and Wan, Xiu-Feng. 2012. Antigenic distance measurements for seasonal influenza vaccine selection. Vaccine, 30(2): 448--453.
  63. Carrel, Margaret and Wan, Xiu-Feng and Nguyen, Tung and Emch, Michael. 2012. Highly pathogenic H5N1 avian influenza viruses exhibit few barriers to gene flow in Vietnam. EcoHealth, 9(1): 60--69.
  64. Wan, XF. 2012. Lessons from Emergence of A/Goose/Guangdong/1996-Like H5N1 Highly Pathogenic Avian Influenza Viruses and Recent Influenza Surveillance Efforts in Southern China. Zoonoses and public health, 59(0): 32--42.

  65. 2011

  66. Wan, Xiu-Feng and Dong, Libo and Lan, Yu and Long, Li-Ping and Xu, Cuiling and Zou, Shumei and Li, Zi and Wen, Leying and Cai, Zhipeng and Wang, Wei and Li, Xiaodan and Yuan, Fan and Sui, Hongtao and Zhang, Ye and Dong, Jie and Sun, Shanhua and Gao, Yan and Wang, Min and Bai, Tian and Yang, Lei and Li, Dexin and Yang, Weizhong and Yu, Hongjie and Wang, Shiwen and Feng, Zijian and Wang, Yu and Guo, Yuanji and Webby, Richard J and Shu, Yuelong. 2011. Indications that live poultry markets are a major source of human H5N1 influenza virus infection in China. Journal of virology, 85(24): 13432--13438.
  67. Zhang, Guihong and Kong, Weili and Qi, Wenbao and Long, Li-Ping and Cao, Zongxi and Huang, Liangzong and Qi, Haitao and Cao, Nan and Wang, Wenhua and Zhao, Furong and Ning, Zhangyong and Liao, Ming and Wan, Xiu-Feng. 2011. Identification of an H6N6 swine influenza virus in southern China. Infection, Genetics and Evolution, 11(5): 1174--1177.
  68. Ducatez, Mariette F and Cai, Zhipeng and Peiris, Malik and Guan, Yi and Ye, Zhiping and Wan, Xiu-Feng and Webby, Richard J. 2011. Extent of antigenic cross-reactivity among highly pathogenic H5N1 influenza viruses. Journal of clinical microbiology, (0): JCM--01279.
  69. Cai, Zhipeng and Zhang, Tong and Wan, Xiu-Feng. 2011. Concepts and applications for influenza antigenic cartography. Influenza and other respiratory viruses, 5(0): 204.
  70. Xuan, Pengfei and Zhang, Yuehua and Tzeng, Tzuen-rong Jeremy and Wan, Xiu-Feng and Luo, Feng. 2011. A quantitative structure--activity relationship (QSAR) study on glycan array data to determine the specificities of glycan-binding proteins. Glycobiology, 22(4): 552--560.
  71. Carrel, Margaret and Wan, Xiu-Feng and Nguyen, Tung and Emch, Michael. 2011. Genetic Variation of highly pathogenic H5N1 avian influenza viruses in vietnam shows both species-specific and spatiotemporal associations. Avian diseases, 55(4): 659--666.
  72. Cai, Zhipeng and Duan, Yueming and Li, Yingshu and Lin, Guohui and Ozden, Mufit and Wan, Xiu-Feng. 2011. IPMiner: a progenitor gene identifier for influenza A virus. Influenza and other respiratory viruses, 5(0): 413.
  73. Long, Li-Ping and Yuan, Changhe and Cai, Zhipeng and Xu, Huiping and Wan, Xiu-Feng. 2011. Mixture model analysis reflecting dynamics of the population diversity of 2009 pandemic H1N1 influenza virus. In silico biology, 11(5): 225--236.
  74. Henne, Kristene L and Wan, Xiu-Feng and Wei, Wei and Thompson, Dorothea K. 2011. SO2426 is a positive regulator of siderophore expression in Shewanella oneidensis MR-1. BMC microbiology, 11(1): 125.
  75. Yan, Lifang and Zhang, Shuping and Pace, Lanny and Wilson, Floyd and Wan, Henry and Zhang, Michael. 2011. Combination of reverse transcription real-time polymerase chain reaction and antigen capture enzyme-linked immunosorbent assay for the detection of animals persistently infected with Bovine viral diarrhea virus. Journal of veterinary diagnostic investigation, 23(1): 16--25.

  76. 2010

  77. Li, Shoujun and Shi, Zhihai and Jiao, Peirong and Zhang, Guihong and Zhong, Zhiwen and Tian, Wenru and Long, Li-Ping and Cai, Zhipeng and Zhu, Xingquan and Liao, Ming and Wan, Xiu-Feng. 2010. Avian-origin H3N2 canine influenza A viruses in Southern China. Infection, Genetics and Evolution, 10(8): 1286--1288.
  78. Cai, Zhipeng and Zhang, Tong and Wan, Xiu-Feng. 2010. A computational framework for influenza antigenic cartography. PLoS computational biology, 6(10): e1000949.
  79. Carrel, Margaret A and Emch, Michael and Jobe, R Todd and Moody, Aaron and Wan, Xiu-Feng. 2010. Spatiotemporal structure of molecular evolution of H5N1 highly pathogenic avian influenza viruses in Vietnam. PloS one, 5(1): e8631.
  80. Wan, Xiu-Feng and Branton, Scott L and Collier, Stephanie D and Evans, Jeff D and Leigh, Spencer A and Pharr, G Todd. 2010. Proteomics inference of genes involved in host adaptation of Mycoplasma gallinarum. Veterinary microbiology, 145(1): 177--184.
  81. Jang, Yunho and Wan, Xiu-Feng. 2010. Development of Chemical Bond based Elastic Network Model and its application in identifying functional motions in H5N1 highly pathogenic avian influenza viruses. International journal of bioinformatics research and applications, 6(1): 1--11.

  82. 2009

  83. Nguyen, Tung and Davis, C Todd and Stembridge, William and Shu, Bo and Balish, Amanda and Inui, Kenjiro and Do, Hoa T and Ngo, Huong T and Wan, Xiu-Feng and McCarron, Margaret and Lindstrom, Stephen E and Cox, Nancy J and Nguyen, Cam V and Klimov, Alexander I and Donis, Ruben O. 2009. Characterization of a highly pathogenic avian influenza H5N1 virus sublineage in poultry seized at ports of entry into Vietnam. Virology, 387(2): 250--256.

  84. 2008

  85. Wan, Xiu-Feng and Nguyen, Tung and Davis, C Todd and Smith, Catherine B and Zhao, Zi-Ming and Carrel, Margaret and Inui, Kenjiro and Do, Hoa T and Mai, Duong T and Jadhao, Samadhan and Balish, Amanda and Shu, Bo and Luo, Feng and Emch, Michael and Matsuoka, Yumiko and Lindstrom, Stephen E and Cox, Nancy J and Nguyen, Cam V and Klimov, Alexander and Donis, Ruben O. 2008. Evolution of highly pathogenic H5N1 avian influenza viruses in Vietnam between 2001 and 2007. PloS one, 3(10): e3462.
  86. Zhao, Zi-Ming and Shortridge, Kennedy F and Garcia, Maricarmen and Guan, Yi and Wan, Xiu-Feng. 2008. Genotypic diversity of H5N1 highly pathogenic avian influenza viruses. Journal of General Virology, 89(9): 2182--2193.
  87. Chourey, Karuna and Wei, Wei and Wan, Xiu-Feng and Thompson, Dorothea K. 2008. Transcriptome analysis reveals response regulator SO2426-mediated gene expression in Shewanella oneidensis MR-1 under chromate challenge. BMC genomics, 9(1): 395.
  88. Gao, Haichun and Pattison, Donna and Yan, Tingfen and Klingeman, Dawn M and Wang, Xiaohu and Petrosino, Joseph and Hemphill, Lisa and Wan, Xiufeng and Leaphart, Adam B and Weinstock, George M and Palzkill, Timothy and Zhou, Jizhong. 2008. Generation and validation of a Shewanella oneidensis MR-1 clone set for protein expression and phage display. PLoS One, 3(8): e2983.
  89. Wan, Xiu-Feng and Ozden, Mufit and Lin, Guohui. 2008. Ubiquitous reassortments in influenza A viruses. Journal of bioinformatics and computational biology, 6(5): 981--999.
  90. Salem, TZ and Turney, CM and Wang, L and Xue, J and Wan, X-F and Cheng, X-W. 2008. Transcriptional analysis of a major capsid protein gene from Spodoptera exigua ascovirus 5a. Archives of virology, 153(1): 149.
  91. Lin, Guohui and Cai, Zhipeng and Wu, Junfeng and Wan, Xiu-Feng and Xu, Lizhe and Goebel, Randy. 2008. Identifying a few foot-and-mouth disease virus signature nucleotide strings for computational genotyping. BMC bioinformatics, 9(1): 279.

  92. 2007

  93. Angellotti, Michael C and Bhuiyan, Shafquat B and Chen, Guorong and Wan, Xiu-Feng. 2007. CodonO: codon usage bias analysis within and across genomes. Nucleic acids research, 35(0): W132--W136.
  94. Wu, Xiaomeng and Cai, Zhipeng and Wan, Xiu-Feng and Hoang, Tin and Goebel, Randy and Lin, Guohui. 2007. Nucleotide composition string selection in HIV-1 subtyping using whole genomes. Bioinformatics, 23(14): 1744--1752.
  95. Wan, Xiu-Feng and Chen, Guorong and Luo, Feng and Emch, Michael and Donis, Ruben. 2007. A quantitative genotype algorithm reflecting H5N1 Avian influenza niches. Bioinformatics, 23(18): 2368--2375.
  96. Wan, Xiu-Feng and Wu, Xiaomeng and Lin, Guohui and Holton, Samuel B and Desmone, Racheal A and Shyu, Chi-Ren and Guan, Yi and Emch, Michael E. 2007. Computational identification of reassortments in avian influenza viruses. Avian diseases, 51(0): 434--439.
  97. Song, Zhao and Chen, Luonan and Ganapathy, Ashwin and Wan, Xiu-Feng and Brechenmacher, Laurent and Tao, Nengbing and Emerich, David and Stacey, Gary and Xu, Dong. 2007. Development and assessment of scoring functions for protein identification using PMF data. Electrophoresis, 28(5): 864--870.
  98. Cheng, Xiao-Wen and Wan, Xiu-Feng and Xue, Jianli and Moore, Richard C. 2007. Ascovirus and its evolution. Virologica Sinica, 22(2): 137.
  99. Kang, C and Nam, Y and Chung, W and Quan, Z and Park, Y and Park, S and Desmone, Racheal and Wan, X and Rhee, S. 2007. Relationship between genome similarity and DNA-DNA hybridization among closely related bacteria. Journal of microbiology and biotechnology, 17(6): 945.
  100. Wan, X and Zhang, YM and Liu, W and Huang, HH and Li, JG. 2007. Clinical and pathological characteristics of patients with glomerular hematuria as the major manifestation. Nan fang yi ke da xue xue bao= Journal of Southern Medical University, 27(10): 1561--1563.
  101. Song, Zhao and Chen, Luonan and Ganapathy, Ashwin and Wan, Xiu-Feng and Brechenmacher, Laurent and Tao, Nengbing and Emerich, David and Stacey, Gary and Xu, Dong. 2007. Supporting Information for Electrophoresis. , (0).

  102. 2006

  103. Wan, Xiu-Feng and Lin, Guohui and Xu, Dong. 2006. Rnall: an efficient algorithm for predicting RNA local secondary structural landscape in genomes. Journal of bioinformatics and computational biology, 4(5): 1015--1031.
  104. Wan, X-F and Zhou, J and Xu, D. 2006. Codono: a new informatics method for measuring synonymous codon usage bias within and across genomes. International Journal of General Systems, 35(1): 109--125.
  105. Shababi, Monir and Bourque, June and Palanichelvam, Karuppaiah and Cole, Anthony and Xu, Dong and Wan, Xiu-Feng and Schoelz, James. 2006. The ribosomal shunt translation strategy of cauliflower mosaic virus has evolved from ancient long terminal repeats. Journal of virology, 80(8): 3811--3822.
  106. Clark, ME and He, Q and He, Z and Huang, KH and Alm, EJ and Wan, X-F and Hazen, TC and Arkin, AP and Wall, JD and Zhou, J-Z and Fields, MW. 2006. Temporal transcriptomic analysis as Desulfovibrio vulgaris Hildenborough transitions into stationary phase during electron donor depletion. Applied and environmental microbiology, 72(8): 5578--5588.
  107. Leaphart, Adam B and Thompson, Dorothea K and Huang, Katherine and Alm, Eric and Wan, Xiu-Feng and Arkin, Adam and Brown, Steven D and Wu, Liyou and Yan, Tingfen and Liu, Xueduan and Wickham, Gene S and Zhou, Jizhong. 2006. Transcriptome profiling of Shewanella oneidensis gene expression following exposure to acidic and alkaline pH. Journal of bacteriology, 188(4): 1633--1642.
  108. Wu, Xiaomeng and Wan, Xiu-Feng and Wu, Gang and Xu, Dong and Lin, Guohui. 2006. Phylogenetic analysis using complete signature information of whole genomes and clustered Neighbour-Joining method. International journal of bioinformatics research and applications, 2(3): 219--248.

  109. 2005

  110. Wan, X-F and Ren, T and Luo, K-J and Liao, M and Zhang, G-H and Chen, J-D and Cao, W-S and Li, Y and Jin, N-Y and Xu, D and Xin, C-A. 2005. Genetic characterization of H5N1 avian influenza viruses isolated in southern China during the 2003--04 avian influenza outbreaks. Archives of virology, 150(6): 1257--1266.
  111. Chung, Won-Hyong and Rhee, Sung-Keun and Wan, Xiu-Feng and Bae, Jin-Woo and Quan, Zhe-Xue and Park, Yong-Ha. 2005. Design of long oligonucleotide probes for functional gene detection in a microbial community. Bioinformatics, 21(22): 4092--4100.
  112. Wan, Xiu-Feng and Xu, Dong. 2005. Computational methods for remote homolog identification. Current Protein and Peptide Science, 6(6): 527--546.
  113. Wan, Xiu-Feng and Xu, Dong. 2005. Intrinsic terminator prediction and its application in Synechococcus sp. WH8102. Journal of Computer Science and Technology, 20(4): 465--482.
  114. Wu, Xiaomeng and Wan, Xiu-Feng and Gang, Wu and Xu, Dong and Lin, Guohui. 2005. Whole genome phylogeny via complete composition vectors. , .

  115. 2004

  116. Rhee, Sung-Keun and Liu, Xueduan and Wu, Liyou and Chong, Song C and Wan, Xiufeng and Zhou, Jizhong. 2004. Detection of genes involved in biodegradation and biotransformation in microbial communities by using 50-mer oligonucleotide microarrays. Applied and environmental microbiology, 70(7): 4303--4317.
  117. Wan, Xiu-Feng and VerBerkmoes, Nathan C and McCue, Lee Ann and Stanek, Dawn and Connelly, Heather and Hauser, Loren J and Wu, Liyou and Liu, Xueduan and Yan, Tingfen and Leaphart, Adam and Hettich, Robert L and Zhou, Jizhong and Thompson, Dorothea K. 2004. Transcriptomic and proteomic characterization of the Fur modulon in the metal-reducing bacterium Shewanella oneidensis. Journal of Bacteriology, 186(24): 8385--8400.
  118. Wan, Xiu-Feng and Xu, Dong and Kleinhofs, Andris and Zhou, Jizhong. 2004. Quantitative relationship between synonymous codon usage bias and GC composition across unicellular genomes. BMC Evolutionary Biology, 4(1): 19.
  119. Wan, Xiu-Feng and Bridges, Susan M and Boyle, John A. 2004. Revealing gene transcription and translation initiation patterns in archaea, using an interactive clustering model. Extremophiles, 8(4): 291--299.
  120. Wan, Xiufeng and Branton, Scott L and Hanson, Larry A and Pharr, Gregory T. 2004. Identification and initial characterization of a putative Mycoplasma gallinarum leucine aminopeptidase gene. Current microbiology, 48(1): 32--38.
  121. Wan, X and Branton, SL and Hughlett, MB and Hanson, LA and Pharr, GT. 2004. Expression and subcellular location of a leucine aminopeptidase of Mycoplasma gallinarum. Int. J. Poult. Sci, 3: 70--74.

  122. Wan, Xiufeng and Xu, Dong and Zhou, Jizhong. 2003. A new informatics method for measuring synonymous codon usage bias. Intelligent engineering systems through artificial neural networks Volume, 13.
  123. Lan, Hong-ling and Fan, Zhi-cheng and Gao, Zhao-bo and LI, Jian-you and WAN, Xiu-feng. 2003. Heterosis performances and correlation analysis of yeild charact ers of summer squash hybrids. JOURNAL-SHANDONG AGRICULTURAL UNIVERSITY, 34(4): 504--508.
  124. Rhee, Sung-keun and Liu, Xueduan and Wu, Liyou and Chong, Song C and Wan, Xiufeng and Zhou, Jizhong. 2003. Detection of Genes Involved in Biodegradation and Biotransformation in Microbial Communities by Using 50-Mer Oligonucleotide Microarrays. , .
  125. Before 2004

  126. Wan, Xiufeng and Bridges, SUSAN M and Boyle, JOHN A and Boyle, Alan P. 2002. Interactive clustering for exploration of genomic data. SmartEng Design, 12: 753--758.
  127. Pharr, GT and Branton, SL and Hanson, LA and Minion, FC and Hughlett, MB and Wan, X. 2002. Characterization of pMGA genes from the F-strain (vaccine strain) of Mycoplasma gallisepticum. Inter. J. Poult. Sci, 1(4): 63--73.

Referred Conference Proceedings


  1. Han, Lei and Zhang, Yu and Wan, Xiu-Feng and Zhang, Tong. 2016. Generalized Hierarchical Sparse Model for Arbitrary-Order Interactive Antigenic Sites Identification in Flu Virus Data. Proceeding KDD ‘16 Proceedings of the 22nd ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, pp. 865--874.
  2. Yang, Jialiang and Li, Jun and Grnewald, Stefan and Wan, Xiu-Feng. 2013. BinAligner: a heuristic method to align biological networks. , pp. S8.
  3. Luo, Feng and Li, Bo and Wan, Xiu-Feng and Scheuermann, Richard H. 2009. Core and periphery structures in protein interaction networks. , pp. S8.
  4. Grindinger, T., F. Luo, X.-F. Wan, and R. H. Scheuermann. 2008. Exploring Core/periphery structures in protein interaction networks provides structure-property relation insights. The 8th IEEE International Conference on Bioinformatics and Biomedicine (BIBM), Philadelphia, PA, November, 2008., pp. 179-186.
  5. Wu, X., R. G. Goebel, X.-F. Wan and G. Lin.. 2006. Weighted Composition Distance for HIV Genotyping.. In Proceedings of the 2006 Computational Systems Bioinformatics Conference. Stanford, California, 14-18 August 2006., pp. 179-190.
  6. X. Wu, X.-F. Wan, D. Xu, and G. Lin.. 2005. Whole Genome Phylogeny Based on Clustered Signature String Composition. . In Posters in 2005 IEEE Computational Systems Bioinformatics Conference (CSB 2005). Stanford University, California. August 8-11, pp. 53-54.
  7. Ganapathy, A., X.-F. Wan, B. D. Gue, J. Wan, J. Thelen, D. W. Emerich, G. Stacey and D. Xu.. 2004. Statistical assessment for Mass-spec protein identification using peptide fingerprinting approach.. In Proceedings of the 26th Annual International Conference IEEE Engineering in Medicine and Biology Society (EMBS 04), Bioinformatics and Computational Biology, San Francisco, CA,, pp. 3051-3054.
  8. Wan, X., D. Xu, and J. Zhou.. 2003. A new informatics method measuring synonymous codon usage bias.. In Intelligent engineering systems through artificial neural networks, vol 13, eds. Dagli et al., pp. 1101-1018.
  9. Wan, X., S. M. Bridges, J. A. Boyle, and A. P. Boyle.. 2002. Interactive clustering for exploration of genomic data.. In Intelligent engineering systems through artificial neural networks, vol 12, eds. Dagli et al., pp. 753-758.

Book Chapters


  1. Wan, Xiu-Feng and Thompson, Dorothea K. 2009. High-Throughput Technologies and Functional Genomics. , pp. 67--113, John Wiley & Sons, Inc..
  2. Wan, Xiu Feng and Emch, Michael and Zhao, Zi Ming. 2009. Advances in molecular evolution of influenza a virus. , Nova Science Publishers, Inc..
  3. Wan, X.-F., D. Ataman, and D. Xu.. 2005. Application of computational biology in understanding emerging infectious diseases: inferring the biological function for S-M complex of SARS-CoV.. In Progress in Bioinformatics, pp. 55-80, Nova Publisher, Inc..
  4. Xu, D., O. Duzlevski, and X.-F. Wan.. 2005. In search of remote homolog. In Handbook of Computational Molecular Biology. , Aluru, Chapter Chapter 33, pp. 1?27, CRC Press.
  5. Wang, Z., T. Liu, J. Wang, X.-F. Wan, and D. Xu.. 0. Remote homolog identification for protein structure prediction and function study.Handbook of Computational Molecular Biology. , CRC Press, in press..