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Journal Articles

 

2015

  1. N. Zhao, B. Martin, C.-K. Yang, F. Luo, and X.-F. Wan. 2015. Association analyses of large-scale glycan microarray data reveal unusual host-specific substructures of influenza A virus binding glycans. Scientific Reports, in press.
  2. H. Xie, X.-F. Wan, Z. Ye, E. Plant, Y. Zhao, Y. Xu, X. Li, C. Finch, N. Zhao, T. Kawano, O. Zoueva, X. Jing, Z. Lin, Z. Zhang, and Y. Zhu. 2015. Cross-Reactivity of 2014/15 Northern Hemisphere Seasonal Influenza Vaccines and Antigenic Maps Derived from Human and Ferret Serological Data. Scientific Reports, in press.
  3. L. Ferguson, L. Eckard, W. B. Epperson, L.-P. Long, D. Smith, C. Huston, S. Genova, R. Webby, X.-F. Wan. 2015. Influenza D virus Infection in Mississippi Beef Cattle. Virology, 486: 28-34.
  4. H. Sun, F. L. Cunningham, J. Harris, Y. Xu, L.-P. Long, K. Hanson-Dorr, J. A. Baroch, P. Fioranelli, M. W. Lutman, T. Li, K. Pedersen, B. S. Schmit, J. Cooley, X. Lin, R. G. Jarman, T. J. DeLiberto and X.-F. Wan. 2015. Dynamics of virus shedding and antibody responses in influenza A virus-infected feral swine. Journal of General Virology, 96(9): 2569-2578.
  5. W. Su, Y. Zhao, C. Wang, Y. Wu, J. Luo, L. Chen, N. Zhao, M. Li, C. Xing, H. Liu, H. Zhang, Y.-F. Chang, H. Ding, X.-F. Wan, and H. He. 2015. Genes of wild bird-origin avian influenza A(H9N2) virus confer high pathogenicity to H7N9 virus. Cell Reports, 12(12): 1-12.
  6. S. Kumar, E. A. Driskell, A. J. Cooley, K. Jia, S. Blackmon, X.- F. Wan, E. W. Uhl, J. T. Saliki, S. Sanchez, P. M. Krimer, and R. J. Hogan. 2015. Fatal Canid herpesvirus 1 Respiratory Infections in Four Apparently Healthy Adult Dogs. Veterinary Pathology, 52(4): 681--687.
  7. Ye, J., F. Wen, Y. Xu, N. Zhao, L. Long, H. Sun, J. Yang, J. Cooley, G. T. Pharr, R. Webby, and X.-F. Wan. 2015. Error-prone PCR-based mutagenesis strategy for rapidly generating high-yield influenza vaccine candidates. Virology, 482:234-243.
  8. Collier, S.D., S.L. Branton, J.D. Evans, S.A. Leigh, X.-F. Wan, A.M. Cooksey, H.A. Olanrewaju, and G. T. Pharr. 2015. Proteomic analysis of Mycoplasma gallispticum Vaccine Strain F. International Journal of Poultry Science, 14(1): 1-12.
  9. Xu, Y., H. Cao, H. Liu, H, Sun, B. Martin, Y. Zhao, Q. Wang, G. Deng, J. Xue, Y. Zong, J. Zhu, F. Wen, L.-P. Long, S.-S. Wong, N. Zhao, X. Fu, M. Liao, G. Hu, R. Webby, G. F. Gao, and X.-F. Wan. 2015. Genesis of a novel influenza A (H10N8) virus causing human infection. Infection, Genetics, and Evolution, 30:159-163.
  10. Martin, B., Jia, K., H. Sun, C. Hall, D. Ware, and X.-F. Wan. 2015. Detection of Influenza antigenic variants directly from clinical samples using quantitative PCR based approximate ligation assays. Virology, 476:151-158.
  11.  

    2014

  12. Spackman, E., D. E. Swayne, M. J. Pantin-Jackwood, X.-F. Wan, M. K. Torchetti, M. Hassan, D. L. Suarez, M. Sa e Silva. 2014. Variation in protection of four divergent avian influenza virus vaccine seed strains against eight clade 2.2.1 and 2.2.1.1. Egyptian H5N1 high pathogenicity variants in poultry. Influenza Other Respir Viruses, 8(6):654-62.
  13. Spackman, E., X.-F. Wan, D. Kapczynski, Y. Xu, M. Pantin-Jackwood, D. L. Suarez, and D. Swayne. 2014. Potency, efficacy, and antigenic mapping of H7 avian influenza virus vaccines against the 2012 H7N3 highly pathogenic avian influenza virus from Mexico. Avian Disease, 58(3):359-366.
  14. Yang, J., T. Zhang, and X.-F. Wan. 2014. Sequence-based Antigenic Change Prediction by a Sparse Learning Method Incorporating Co-evolutionary Information. PLoS ONE, 9(9):e106660.
  15. Feng, Z., Y. Bai, J.-T. Yao, G. T. Pharr, X.-F. Wan, S. Xiao, L.-Z. Chi, Y. Gan, H.-Y. Wang, Y. Wei, M. Liu, Q.-Y. Xiong, F. Bai, B. Li, X.-S. Wu, and G.-Q. Shao. 2014. Identification of the biomarker protein for Mycoplasma hyopneumoniae diagnosis. Veterinary Journal, pii: S1090-0233(14)00276-7.
  16. Yang, J., S. Grunewald, Y. Xu, and X.-F. Wan. 2014. Quartet-based methods to reconstruct phylogenetic networks. BMC Systems Biology, 8(1):21.
  17. Beato, M.S., Y. Xu, L.-P. Long, I. Capua, and X.-F. Wan. 2014. Antigenic and genetic evolution of low pathogenic avian influenza viruses (H7N3) following heterologous vaccination. Clinical and Vaccine Immunology 21(5):603-12.
  18. Feng, Z., Baroch, J, L.-P. Long, Y. Xu, F. Cunningham, K. Pedersen, M. Lutman, B. Schmit, T. Deliberto, and X.-F. Wan. 2014. H3N2 subtypes of influenza infections in feral hogs in North America. 2014. Emerging Infectious Diseases, 20(5):843-6.
  19.  

    2013

  20. Warren, S., X.-F. Wan, G. Conant, and D. Korkin. 2013. Extreme evolutionary conservation of functionally important regions in H1N1 influenza proteome. PLoS ONE, 8(11):e81027.
  21. Yang, G., S. Li, S. Blackmon, J. Ye, K. C. Bradley, J. Cooley, D. Smith, L. Hanson, C. Cardona, D. Steinhauer, R. Webby, M. Liao, and X.-F. Wan. 2013. Mutation tryptophan to leucine at the position 222 of hemagglutinin could facilitate H3N2 influenza A virus infection in dogs. Journal of General Virology, 12:2599-608.
  22. Wan, X.-F., M. Carrel, L.-P. Long, A. Arker, M. Emch. 2013. Perspective on emergence and re-emergence of amantadine resistant influenza A viruses in domestic animals in China. 2013. Infections, Genetics, and Evolution, 20: 298-303
  23. Feng, Z., Y.-N. Wei, G.-L. Li, X.-M. Lu, X.-F. Wan, Z.-W. Wang, M. Kong, Y. Gan, F.-F. Bai, M.-J. Liu, Q.-Y. Xiong, X.-S. Wu, and G.-Q. Shao. 2013. Development and validation of an attenuated Mycoplasma hyopneumoniae Aerosol vaccine. Veterinary Microbiology, 167(3-4):417-24.
  24. Ye, J., Y. Xu, J. Harris, A.S. Bowman, F. Cunningham, C. Cardona, K. J. Yoon, R. D. Selmons, and X.-F. Wan. 2013. Mutation from arginine to lysine at the position 189 of hemagglutinin contributes to the antigenic drift in H3N2 swine influenza viruses. Virology, 446(1-2):225-9.
  25. Yang, J., J. Li, S. Grunewald, and X.-F. Wan. 2013. BinAligner: a heuristic method to align biological networks. BMC Bioinformatics, 14(Suppl 14):S8.
  26. Wan, H., J. Gao, K. Xu, H. Chen, L. K. Couzens, K. H. Rivers, J.D. Easterbrook, K. Yang, L. Zhong, M. Rajabi, J. Ye, I. Sultana, X.-F. Wan, X. Liu, D. R. Perez, J. K Taubenberger, and M. C. Eichelberger. 2013. Molecular basis for broad neuraminidase immunity: conserved epitopes in seasonal and pandemic H1N1 as well as H5N1 influenza viruses. Journal of Virology, 87(16):9290-300.
  27. Yuan, X., T. Zhang, and X.-F. Wan. 2013. A joint matrix completion and flitering model for influenza serological data integration. PLoS ONE, 8(7):e69842.
  28. Sun, H., J. Yang, T. Zhang, L. Long, K. Jia, G. Yang, R. Webby, and X.-F. Wan. 2013. Inferring influenza antigenicity using sequence. mBio, 4(4).
  29. Feng, Z., J. Gomez, A. Bowman, J. Ye, L.-P. Long, B. Martin, K. Jia, J. Nolting, F. Cunningham, C. Cardona, J. Zhang, K.J. Yoon, R. Slemons, and X.-F. Wan. 2013. Antigenic and genetic characterization of swine influenza viruses from Ohio agricultural fairs. Journal of Virology, 87(13):7655-7667.
  30. Mummer, A., H. Weiss, L. P. Long, J. Amigo, and X.-F. Wan. 2013. A prospective on multiple waves of influenza pandemics. PLoS ONE, 8(4):e60343.
  31. Yang, J., S. Grunewald, and X.-F. Wan. 2013. QuartetNet: A Quartet Based Method to Reconstruct Phylogenetic Networks. Molecular Biology and Evolution, 30(5):1206-17.
  32. Wan, X.-F., J. L. Barnett, F. Cunningham, S. Chen, M. G. Yang, S. Nash, L.-P. Long, L. Ford, S. Blackmon, Y. Zhang, L. Hanson, and Q. He. 2013. Detection of African Swine Fever Virus-like Sequences in Ponds in the Mississippi Delta through Metagenomic Sequencing. Virus Genes, 46(3):441-446.
  33. Beato, M.S., M. Mancin, J. Yang, A. Buratin, M. Ruffa, S. Maniero, A. Fusaro, I. Monne, C. Terregino, X.-F. Wan, and I. Capua. 2013. Antigenic characterization of recent H5N1 highly pathogenic avian influenza viruses circulating in Egyptian poultry. Virology, 435(2):350-6.
  34.  

    2012

  35. Long, L.-P., C. Yuan, Z. Cai, H. Xu, and X.-F. Wan. 2012. Mixture model analysis reflecting dynamics of the population diversity of 2009 pandemic H1N1 influenza virus. In Silico Biology, 11(5): 225-236.
  36. Cai, Z., M. F. Ducatez, T. Zhang, J. Yang, L.-P. Long, A. C. Boon, R. J. Webby, and X.-F. Wan. 2012. Identifying antigenicity associated sites in highly pathogenic H5N1 influenza virus hemagglutinin by using sparse learning. Journal of Molecular Biology, 422(1):145-55.
  37. Carrel, M., M. Emch, T. Nguyen, J. Todd, and X. F. Wan. 2012. Population-environment drivers of H5N1 avian influenza molecular change in Vietnam. Health and Place, 18(5):1122-31.
  38. Wan, X.-F. 2012. Lessons from emergence of A/goose/Guangdong/1996-like H5N1 highly pathogenic avian influenza viruses and recent influenza surveillance efforts in southern China. Zoonoses and Public Health, 59(S2): 32-42.
  39. Zhou, F., G. Wang, P. Buchy, Z. Cai, H. Chen, X.-F. Wan, V. Deubel, and P. Zhou. A tri-clade DNA vaccine designed on the basis of a comprehensive serologic study elicits neutralizing antibody responses against all H5 clades and subclades of influenza virus. J Virol, 86(12):6970-8, 2012.
  40. Barnett, J. L., J. Yang, Cai, Z., T. Zhang, X.-F. Wan. 2012. AntigenMap 3D: an online antigenic cartography resource. Bioinformatics, 28(9):1292-3.
  41. Carrel, M., X. F. Wan, T. Nguyen, and M. Emch. 2012. H5N1 avian influenza viruses exhibit few barriers to gene flow in Vietnam. Ecohealth, 9(1):60-69.
  42. Cai, Z., T. Zhang, and X.-F. Wan. 2012. Antigenic distance measurements for seasonal influenza vaccine selection. Vaccine, 30(2):448-453.PDF.
  43. Xuan, P., Y. Zhang, T. Tzeng, X.-F. Wan, and F. Luo. 2012. A quantitative structure-activity relationship (QSAR) study on glycan array data to determine the glycan binding specificities. Glycobiology, 22(4), 552-560.PDF.

  44. 2011

  45. Carrel, M., X.-F. Wan, T. Ngyuen, and M. Emch. Genetic variation of highly pathogenic H5N1 avian influenza viruses in Vietnam shows both species specific and spatiotemporal associations. Avian Diseases, 55(4):659-666
  46. Wan, X.-F., L. Dong, Y. Lan, L.-P. Long, C. Xu, S. Zou, Z. Li, L. Wen, Z. Cai, W. Wang, X. Li, F. Yuan, H. Sui, Y. Zhang, J. Dong, S. Sun, Y. Gao, M. Wang, T. Bai, L. Yang, D. Li, W. Yang, H. Yu, S. Wang, Z. Feng, Y. Wang, Y. Guo, R. J. Webby, and Y. Shu. 2011. Indications that live poultry markets are a major source of human H5N1 influenza virus infection in China. J. Virol. 85:13432-13438.PDF.
  47. Ducatez, M.F., Z. Cai, M. Peiris, Y. Guan, Z. Ye, X.-F. Wan, and R. J. Webby. Extent of antigenic cross-reactivity among highly pathogenic H5N1 influenza viruses. Journal of Clinical Microbiology, 49(10):3531-3536. PDF.
  48. Henne, K., X.-F. Wan, W. Wei, and D. K.Thompson. 2011. SO2426 is a positive regulator of siderophore expression in Shewanella oneidensis MR-1. BMC Microbiology, 11(1): 125. PDF.
  49. Zhang, G., W. Kong, W. Qi, L.-P. Long, Z. Cao, L. Huang, H. Qi, N. Cao, W. Wang, F. Zhao, M. Liao, and X.-F. Wan. 2011. Identification of an H6N6 swine influenza virus in southern China. Infection, Genetics, and Evolution, 11(5):1174-7. PDF
  50. Cai, Z., T. Zhang, and X.-F. Wan. 2011. Concepts and applications for influenza antigenic cartography. Influenza and Other Respiratory Viruses, 5 (Suppl. 1), 204–207. PDF
  51. Cai Z., Y. Duan, Y. Li, G. Lin, M. Ozden, and X.-F. Wan. 2011. IPMiner: a progenitor identifier for influenza A virus. OPTIONS VII, Influenza and Other Respiratory Viruses, 5 (Suppl. 1), 413–415. PDF
  52. Yan, L., S. Zhang, L. Pace, F. Wilson, H. Wan, and M. Zhang. 2011. Combination of reverse transcriptase real-time polymerase chain reaction and antigen capture enzyme-linked immunosorbent assay for the detection of animals persistently infected with bovine viral diarrhea virus. Journal of Veterinary Diagnostic Investigation , 23: 16-25. PDF .
  53.  

    2010

  54. Cai, Z., T. Zhang, and X.-F. Wan. 2010. A computational framework for influenza antigenic cartography. PLoS Computational Biology, 6(10):e1000949. PDF.
  55. Li, S., Z. Shi, P. Jiao, G. Zhang, Z. Zhong, W. Tian, L.-P. Long, Z. Cai, X. Zhu, M. Liao, and X.-F. Wan. 2010. Avian-origin H3N2 canine influenza A viruses in Southern China. Infection, Genetics, and Evolution, 10: 1286-1288. PDF.
  56. Wan, X.-F., S.L. Branton, S.D. Collier, J.D. Evans, S. A. Leigh, and G. T. Pharr. 2010. Proteomics inference of genes involved in host adaptation of Mycoplasma gallinarum. Veterinary Microbiology, 145: 177-184. PDF.
  57. Jang, Y. and X.-F. Wan. 2010. Development of chemical bond based Elastic Network Model and its application in identifying functional motions in H5N1 highly pathogenic avian influenza viruses. International Journal of Bioinformatics Research and Applications, 6(1):1-11. PDF.
  58. Carrel, M., M. Emch, R.T. Jobe, A. Moody, and X.-F. Wan. 2010. Spatiotemporal structure of molecular evolution of H5N1 highly pathogenic avian influenza viruses in Vietnam. PLoS ONE, 5(1):e8631. PDF.
  59.  

    2009

  60. Luo, F., B. Li, X.-F. Wan, and R. H. Scheuermann. 2009. Core and periphery structures in protein interaction networks. BMC Bioinformatics, 10 (Suppl 4): S8. PDF.
  61. Nguyen, T., C.T. Davis, W. Stembridge, B. Shu, A. Balish, K. Inui, H. T. Do, H.T. Ngo, X.-F. Wan, M. McCarron, S. E. Lindstrom, N. J. Cox, C.V. Nguyen, A. Klimov, and R. Donis. 2009. A novel highly pathogenic avian influenza H5N1 virus sublineage in poultry seized at ports of entry into Vietnam. Virology, 387:250-256. PDF.
  62.  

    2008

  63. Wan, X.-F., T. Nguyen, C.T. Davis, C.B. Smith, Z. Zhao, M. Carrel, K. Inui, H. T. Do, D. T. Mai, S. Jadhao, A. Balish, F. Luo, M. Emch, Y. Matsuoka, N. J. Cox, C.V. Nguyen, A. Klimov, and R. Donis. 2008. Evolution of highly pathogenic H5N1 avian influenza viruses in Vietnam between 2001 and 2007. PLoS ONE, 3(10): e3462. PDF.
  64. Zhao, Z., K. Shortridge, M. Garcia, Y. Guan, and X.-F. Wan. 2008. Genotypic diversity of highly pathogenic H5N1 avian influenza viruses. Journal of General Virology, 89: 2182-2193. PDF.
  65. Wan, X.-F , M. Ozden, and G. Lin. 2008. Ubiquitous reassortments in Influenza A viruses. Journal of Bioinformatics and Computational Biology, 6:981-99. PDF.
  66. Chourey, K., W. Wei, X-F. Wan, D. Thompson. 2008. An orphan response regulator is involved in metal stress response pathways in Shewanella oneidensis MR-1. BMC Genomics, 9: 395. PDF.
  67. Wan, X.-F., P. P. Dempsey, and D. Xu. 2008. RnallViewer: A tool for RNA local secondary structure prediction, localization, and visualization. International Journal of Computational Science, Special Issue on Bioinformatics and Computational Biology, 2(5): 607-612. PDF.
  68. Gao, H., Pattison, D., Yan, T., Klingeman,D., Wang, X., Petrosino, J., Hemphill, L., Wan, X-.F., Leaphart, A., Weinstock, G., and Palzkill, T., and J. Zhou. 2008. Generation and validation of a Shewanella oneidensis MR-1 clone set for protein expression and phage display. PLoS ONE, 3(8): e2983. PDF.
  69. Lin, G. Z. Cai, J. Wu, X.-F. Wan, L. Xu, and R. Goebel. 2008. Identifying signature composition strings for Foot-and-Mouth disease virus serotype recognition. BMC Bioinformatics, 9: 279. PDF.
  70. Salem, T.,  J. Xue, M. Colin, L. Wang, X.-F. Wan and X. W. Cheng. 2008. Transcriptional analysis of a major capsid protein gene from Spodoptera exigua Ascovirus. Archives of Virology, 153:149-162. PDF.
  71.  

    2007

  72. Kang, C.-H., Y.-D. Nam, W.-H. Chung, Z.-X. Quan, Y.-H. Park, S.-J. Park, R. A. Desmone, X.-F. Wan, and S.-K. Rhee. 2007. Relationship between genome similarity and DNA-DNA hybridization among closely related bacteria. Journal of Microbiology and Biotechnology, 17: 945-951. PDF.
  73. Wan, X.-F. , G. Chen, F. Luo, M. Emch, and R. Donis. 2007. A quantitative genotype algorithm reflecting H5N1 Avian Influenza niches. Bioinformatics, 23: 2368-2375. PDF.
  74. Wu, X., Z. Cai, X.-F. Wan, T. Hoang, R. Goebel, and G. Lin. 2007. Nucleotide composition string selection in HIV-1 subtyping using whole genomes. Bioinformatics, 23:1744-52. PDF.
  75. Angellotti, M.C., S.B. Bhuiyan, G. Chen, and X.-F. Wan. 2007. CodonO: codon usage analysis within and across genomes.  Nucleic Acid Research, 35: W132-W136. PDF.
  76. Wan, X.-F. , X. Wu, G. Lin, S. B. Holton, R. A. Desmone, C.-R. Shyu, M. Emch, and Y. Guan. 2007. Computational Identification of reassortments in avian influenza viruses. Avian Diseases, 51: 434-439. PDF.
  77. Cheng, X.-W., X.-F. Wan, J. Xue, and R. Moore. 2007. Ascovirus and its evolution. Virologica Sinica, 22: 19. PDF.
  78. Song, Z, L. Chen, A. Ganapathy, X.-F. Wan, N. Tao, D. Emerich, G. Stacey, and D. Xu. 2007. Development and assessment of scoring functions for protein identification using peptide mass fingerprinting data. Electrophoresis, 28: 864-870. PDF.
  79.  

    2006

  80. Wan, X.-F., G. Lin, and D. Xu. 2006. Rnall: An efficient algorithm for predicting RNA local secondary structural landscape in genomes. Journal of Bioinformatics and Computational Biology, 4: 1015-1031. PDF.
  81. Clark, M.E., Q. He, Z. He, K.H. Huang, E.J. Alm, X.-F. Wan, T.C. Hazen, A.P. Arkin, J.D. Wall, J. Zhou, and M.W. Fields. 2006. Temporal transcriptomic analysis of Desulfovibrio vulgaris Hildenborough transition into stationary phase growth during electron donor depletion. Applied Environmental Microbiology, 72:5578-5588. PDF.
  82. Wu, X., X.-F. Wan, G. Wu, D. Xu, and G. Lin. 2006. Phylogenetic analysis using complete signature information of whole genomes and clustered neighbor-joining method. International Journal of Bioinformatics Research and Applications, 2:219-248. PDF.
  83. Shababi, M., J. Bourque, P. Karuppaiah, A. Cole, D. Xu, X.-F. Wan, and J. Schoelz. 2006. The ribosomal shunt translation strategy of Cauliflower mosaic virus has evolved from ancient long terminal repeats. Journal of Virology, 80: 3811-3822. PDF.
  84. Wan, X.-F., J. Zhou, and D. Xu. 2006. CodonO: a new informatics method measuring synonymous codon usage bias. International Journal of General Systems, 35: 109-125. PDF.
  85. Leaphart, A. B, D. K. Thompson, K. Huang, E. Alm, X.-F. Wan, A. Arkin, S. D. Brown, L. Wu, and J. Zhou.  2006. Transcriptome analysis of Shewanella oneidensis gene expression in response to acidic and alkaline pH stress. Journal of Bacteriology, 188: 1633-1642. PDF.
  86.  

    2005

  87. Wan, X.-F. and D. Xu. 2005. Computational detection of remote homology. Current Protein and Peptide Science, 6: 527-546. PDF.
  88. Chung, W. H., S. K. Rhee, X.-F. Wan, J.-W. Bae, Z.-X. Quan, and Y.-H. Park. 2005. Design of long oligonucleotide probe for detection of functional gene in microbial community. Bioinformatics, 21: 4092-4100. PDF.
  89. Wan, X.-F. and D. Xu. 2005. Intrinsic terminator prediction and its application in Synechococcus sp. WH8102. Journal of Computer Science and Technology, 20: 465-482. PDF.
  90. Wan, X.-F., T. Ren, K.-J. Luo, M. Liao, G.-H. Zhang, J.-D. Chen, W.-S. Cao, Y. Li, N.-Y. Jin, D. Xu, and C.A. Xin. 2005. Genetic characterization of H5N1 avian influenza viruses isolated in southern China during the 2003-04 avian influenza pandemic. Archives of Virology, 150: 1257-1266. PDF.
  91.  

    2004

  92. Wan, X.-F., N.C. VerBerkmoes, L. A. McCue, D. Stanek, H. Connelly, L. Wu, X. Liu, T. Yan, A. Leaphart, R. L. Hettich, J. Zhou, and D. K. Thompson. 2004. Transcriptomic and proteomic characterization of the fur modulon in the metal-reducing bacterium Shewanella oneidensis. Journal of Bacteriology, 186: 8385-8400. PDF.
  93. Rhee, S. K., X. Liu, L. Wu, S. C. Chong, X. Wan, and J. Zhou. 2004. Detection of biodegradation and biotransformation genes in microbial communities using 50-mer oligonucleotide microarrays. Applied and Environmental Microbiology, 70: 4303-4317. PDF.
  94. Wan, X.-F., S. M. Bridges, and J. A. Boyle. 2004. Revealing different transcription initiation and translation initiation patterns in archaea using an interactive clustering model. Extremophiles, 8: 291-299. PDF.
  95. Wan, X.-F., D. Xu, A. Kleinhofs, and J. Zhou. 2004. Quantitative relationship between codon usage bias and GC composition across the unicellular genomes. BMC Evolutionary Biology, 4: 19 (http://www.biomedcentral.com/1471-2148/4/19/). PDF.
  96. Wan, X., S. L. Branton, L. A. Hanson, and G. T. Pharr. 2004. Identification and initial characterization of an aminopeptidase gene in M. gallinarum. Current Microbiology, 48: 32-38. PDF.
  97. Wan, X., S. L. Branton, M. B. Hughlett, L.A. Hanson, and G. T. Pharr. 2004. Expression and subcellular location of a leucine aminopeptidase of Mycoplasma gallinarum. International Journal of Poultry Science 3(1): 70-74. PDF.
  98.  

    Before 2004

  99. Pharr, G. T., S. L. Branton, L. A. Hanson, F. C. Minion, M. B. Hughlett, and X. Wan. 2002. Characterization of pMGA genes from the F-strain (Vaccine strain) of Mycoplasma gallisepticum. International Journal of Poultry Science, 1 (4): 63-73. PDF.
  100. Guo, Y., M. Wang, X. Xu, X. Wan, J. Guo, J. Dong, and Y. Zhang. 1999. Nucleotide sequence of A/Goose/Guangdong/2/96(H5N1) virus M and NS RNA. Chinese Journal of Experimental and Clinical Virology, 4 (13): 305-309. PDF.
  101. Guo, Y., X. Xu, and X. Wan. 1998. Genetic characterization of an avian influenza A (H5N1) virus isolated from a sick goose in China. Chinese Journal of Experimental and Clinical Virology, 12(4): 322-325. PDF.
  102. Wan, X. and C. Xin. 1998. Prevention and control of Avian Influenza. Journal of Poultry Husbandry and Diseases Control, 6: 5-6.
  103. Xin, C., M. Liao, G. Huang, and X. Wan. 1996. Avian Influenza. Journal of Poultry Husbandry and Diseases Control, 12: 4-5.
  104. Hu, M.W. and X. Wan. 1996. Current status of sturgeon aquaculture. Freshwater Fisheries, 26(5): 28-30.
  105. Xin, C., M. Liao, G. Huang, and X. Wan. 1995. Fluoride and soft leg symptom in poultry. Journal of Poultry Husbandry and Diseases Control, 12: 13-14.
  106.  

     

    Referred Conference Proceedings

  107. Grindinger, T., F. Luo, X.-F. Wan, and R. H. Scheuermann. 2008. Exploring Core/periphery structures in protein interaction networks provides structure-property relation insights. The 8th IEEE International Conference on Bioinformatics and Biomedicine (BIBM), Philadelphia, PA, November, 2008. Pages 179-186. PDF.
  108. Wu, X., R. G. Goebel, X.-F. Wan and G. Lin.  2006. Weighted Composition Distance for HIV Genotyping. In Proceedings of the 2006 Computational Systems Bioinformatics Conference. Stanford, California, 14-18 August 2006. Pages 179-190. PDF.
  109. X. Wu, X.-F. Wan, D. Xu, and G. Lin. Whole Genome Phylogeny Based on Clustered Signature String Composition. 2005. In Posters in 2005 IEEE Computational Systems Bioinformatics Conference (CSB 2005). Stanford University, California. August 8-11, pp. 53-54. PDF. 
  110. Ganapathy, A., X.-F. Wan, B. D. Gue, J. Wan, J. Thelen, D. W. Emerich, G. Stacey and D. Xu. 2004. Statistical assessment for Mass-spec protein identification using peptide fingerprinting approach. In Proceedings of the 26th Annual International Conference IEEE Engineering in Medicine and Biology Society (EMBS'04), Bioinformatics and Computational Biology, San Francisco, CA, pp. 3051-3054. PDF.
  111. Wan, X., D. Xu, and J. Zhou. 2003. A new informatics method measuring synonymous codon usage bias. In Intelligent engineering systems through artificial neural networks, vol 13, eds. Dagli et al., 1101-1018. New York, NY: ASME Press. PDF.
  112. Wan, X., S. M. Bridges, J. A. Boyle, and A. P. Boyle. 2002. Interactive clustering for exploration of genomic data. In Intelligent engineering systems through artificial neural networks, vol 12, eds. Dagli et al., 753-758. New York, NY: ASME Press. PDF.
  113.  

     

    Book Chapters

  114. Wan, X.-F., M. Emch, and Z.-M. Zhao. 2009. Advances in molecular evolution of influenza A viruses. In Global View at Fight against Influenza, edited by Mitrasinovic, Chapter 4, pp31-48, Nova Publisher, Inc. PDF.
  115. Wan, X.-F. and D. K. Thompson. 2009. High-throughput technologies and functional genomics. In Systems biology and synthetic biology, edited by Fu, Chapter 3, pp. 63-112, John Wiley & Son, Inc.
  116. Wan, X.-F., D. Ataman, and D. Xu. 2005. Application of computational biology in understanding emerging infectious diseases: inferring the biological function for S-M complex of SARS-CoV. In Progress in Bioinformatics, pp. 55-80, Nova Publisher, Inc.
  117. Xu, D., O. Duzlevski, and X.-F. Wan. 2005. In search of remote homolog. In Handbook of Computational Molecular Biology, edited by Aluru, Chapter 33, pp.1-27, CRC Press.